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- Publications
- Influence
Transcriptome and genome sequencing uncovers functional variation in humans
- T. Lappalainen, M. Sammeth, +54 authors E. Dermitzakis
- Biology, Medicine
- Nature
- 15 September 2013
Genome sequencing projects are discovering millions of genetic variants in humans, and interpretation of their functional effects is essential for understanding the genetic basis of variation in… Expand
The PRIDE database and related tools and resources in 2019: improving support for quantification data
- Yasset Pérez-Riverol, A. Csordas, +20 authors J. Vizcaíno
- Biology, Computer Science
- Nucleic Acids Res.
- 5 November 2018
TLDR
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
- A. Brazma, Pascal Hingamp, +21 authors M. Vingron
- Biology, Medicine
- Nature Genetics
- 1 December 2001
Microarray analysis has become a widely used tool for the generation of gene expression data on a genomic scale. Although many significant results have been derived from microarray studies, one… Expand
ArrayExpress—a public repository for microarray gene expression data at the EBI
- H. Parkinson, U. Sarkans, +15 authors A. Brazma
- Biology, Computer Science
- Nucleic Acids Res.
- 17 December 2004
TLDR
Global transcriptional responses of fission yeast to environmental stress.
We explored transcriptional responses of the fission yeast Schizosaccharomyces pombe to various environmental stresses. DNA microarrays were used to characterize changes in expression profiles of all… Expand
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
- Steffen Durinck, Y. Moreau, +4 authors W. Huber
- Biology, Computer Science
- Bioinform.
- 15 August 2005
TLDR
Periodic gene expression program of the fission yeast cell cycle
- G. Rustici, J. Mata, +7 authors J. Bähler
- Biology, Medicine
- Nature Genetics
- 13 June 2004
Cell-cycle control of transcription seems to be universal, but little is known about its global conservation and biological significance. We report on the genome-wide transcriptional program of the… Expand
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
- Waradon Sungnak, N. Huang, +78 authors F. Figueiredo
- Biology, Medicine
- Nature Medicine
- 23 April 2020
We investigated SARS-CoV-2 potential tropism by surveying expression of viral entry-associated genes in single-cell RNA-sequencing data from multiple tissues from healthy human donors. We co-detected… Expand
A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
- R. Myers, J. Stamatoyannopoulos, +311 authors Brian A. Risk
- Biology, Medicine
- PLoS biology
- 1 April 2011
The mission of the Encyclopedia of DNA Elements (ENCODE) Project is to enable the scientific and medical communities to interpret the human genome sequence and apply it to understand human biology… Expand
ArrayExpress update—simplifying data submissions
- N. Kolesnikov, E. Hastings, +15 authors A. Brazma
- Biology, Medicine
- Nucleic Acids Res.
- 31 October 2014
TLDR