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Transcriptome and genome sequencing uncovers functional variation in humans
Genome sequencing projects are discovering millions of genetic variants in humans, and interpretation of their functional effects is essential for understanding the genetic basis of variation inExpand
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The PRIDE database and related tools and resources in 2019: improving support for quantification data
TLDR
We summarize the developments in PRIDE resources and related tools since the previous update manuscript was published in 2016. Expand
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Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
Microarray analysis has become a widely used tool for the generation of gene expression data on a genomic scale. Although many significant results have been derived from microarray studies, oneExpand
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ArrayExpress—a public repository for microarray gene expression data at the EBI
TLDR
ArrayExpress is a public repository for microarray data that supports the MIAME (Minimum Informa-tion About a Microarray Experiment) requirements and stores well-annotated raw and normalized data. Expand
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Global transcriptional responses of fission yeast to environmental stress.
We explored transcriptional responses of the fission yeast Schizosaccharomyces pombe to various environmental stresses. DNA microarrays were used to characterize changes in expression profiles of allExpand
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BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
TLDR
biomaRt is a new Bioconductor package that integrates BioMart data resources with data analysis software in bioconductor. Expand
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Periodic gene expression program of the fission yeast cell cycle
Cell-cycle control of transcription seems to be universal, but little is known about its global conservation and biological significance. We report on the genome-wide transcriptional program of theExpand
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SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
We investigated SARS-CoV-2 potential tropism by surveying expression of viral entry-associated genes in single-cell RNA-sequencing data from multiple tissues from healthy human donors. We co-detectedExpand
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A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
The mission of the Encyclopedia of DNA Elements (ENCODE) Project is to enable the scientific and medical communities to interpret the human genome sequence and apply it to understand human biologyExpand
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ArrayExpress update—simplifying data submissions
TLDR
The ArrayExpress Archive of Functional Genomics Data (http://www.ebi.ac.uk/arrayexpress) is an international functional genomics database at the European Bioinformatics Institute (EMBL-EBI) recommended by most journals as a repository for data supporting peer-reviewed publications. Expand
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