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Investigating Semantic Similarity Measures Across the Gene Ontology: The Relationship Between Sequence and Annotation
MOTIVATION Many bioinformatics data resources not only hold data in the form of sequences, but also as annotation. In the majority of cases, annotation is written as scientific natural language: thisExpand
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TAMBIS--Transparent Access to Multiple Bioinformatics Information Sources.
The TAMBIS project aims to provide transparent access to disparate biological databases and analysis tools, enabling users to utilize a wide range of resources with the minimum of effort. A prototypeExpand
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Semantic Similarity Measures as Tools for Exploring the Gene Ontology
Many bioinformatics resources hold data in the form of sequences. Often this sequence data is associated with a large amount of annotation. In many cases this data has been hard to model, and hasExpand
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Making sense of microarray data distributions
MOTIVATION Typical analysis of microarray data has focused on spot by spot comparisons within a single organism. Less analysis has been done on the comparison of the entire distribution of spotExpand
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Transparent access to multiple bioinformatics information sources
This paper describes the Transparent Access to Multiple Bioinformatics Information Sources project, known as TAMBIS, in which a domain ontology for molecular biology and bioinformatics is used in aExpand
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TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources
UNLABELLED TAMBIS (Transparent Access to Multiple Bioinformatics Information Sources) is an application that allows biologists to ask rich and complex questions over a range of bioinformaticsExpand
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PEDRo: A database for storing, searching and disseminating experimental proteomics data
BackgroundProteomics is rapidly evolving into a high-throughput technology, in which substantial and systematic studies are conducted on samples from a wide range of physiological, developmental, orExpand
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A systematic approach to modeling, capturing, and disseminating proteomics experimental data
Both the generation and the analysis of proteome data are becoming increasingly widespread, and the field of proteomics is moving incrementally toward high-throughput approaches. Techniques are alsoExpand
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Vulnerability versus resilience to prenatal stress in male and female rats; Implications from gene expression profiles in the hippocampus and frontal cortex
Adverse life events during pregnancy may impact upon the developing fetus, predisposing prenatally stressed offspring to the development of psychopathology. In the present study, we examined theExpand
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Query processing in the TAMBIS bioinformatics source integration system
Conducting bioinformatic analyses involves biologists in expressing requests over a range of highly heterogeneous information sources and software tools. Such activities are laborious, and requireExpand
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