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Investigating Semantic Similarity Measures Across the Gene Ontology: The Relationship Between Sequence and Annotation
TLDR
In this paper we investigate the use of ontological annotation to measure the similarities in knowledge content or 'semantic similarity' between entries in a data resource. Expand
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Semantic Similarity Measures as Tools for Exploring the Gene Ontology
TLDR
We have adapted information content based measures for use with the Gene Ontology, and examine various properties of GO. Expand
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TAMBIS--Transparent Access to Multiple Bioinformatics Information Sources.
TLDR
The TAMBIS project aims to provide transparent access to disparate biological databases and analysis tools, enabling users to utilize a wide range of resources with the minimum of effort. Expand
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Making sense of microarray data distributions
TLDR
MOTIVATION Typical analysis of microarray data has focused on spot by spot comparisons within a single organism. Expand
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Transparent access to multiple bioinformatics information sources
TLDR
This paper describes the Transparent Access to Multiple Bioinformatics Information Sources project, known as TAMBIS, in which a domain ontology for molecular biology and bioinformatrics is used in a retrieval-based information integration system for biologists. Expand
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TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources
TLDR
UNLABELLED TAMBIS (Transparent Access to Multiple Bioinformatics Information Sources) is an application that allows biologists to ask rich and complex questions over a range of bioinformatic resources. Expand
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PEDRo: A database for storing, searching and disseminating experimental proteomics data
BackgroundProteomics is rapidly evolving into a high-throughput technology, in which substantial and systematic studies are conducted on samples from a wide range of physiological, developmental, orExpand
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A systematic approach to modeling, capturing, and disseminating proteomics experimental data
TLDR
We present a UML (unified modeling language) approach to proteomics experimental data, describe XML and SQL (structured query language) implementations of that model, and discuss capture, storage, and dissemination strategies. Expand
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Vulnerability versus resilience to prenatal stress in male and female rats; Implications from gene expression profiles in the hippocampus and frontal cortex
Adverse life events during pregnancy may impact upon the developing fetus, predisposing prenatally stressed offspring to the development of psychopathology. In the present study, we examined theExpand
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Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection
African bovine trypanosomiasis caused by Trypanosoma sp., is a major constraint on cattle productivity in sub-Saharan Africa. Some African Bos taurus breeds are highly tolerant of infection, but theExpand
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