A. Brass

Publications
Influence

Investigating Semantic Similarity Measures Across the Gene Ontology: The Relationship Between Sequence and Annotation

P. Lord, R. Stevens, A. Brass, C. Goble
Computer Science, Medicine
Bioinform.
1 July 2003

In this paper we investigate the use of ontological annotation to measure the similarities in knowledge content or 'semantic similarity' between entries in a data resource. Expand

P. Lord, R. Stevens, A. Brass, C. Goble
Computer Science, Medicine
Pacific Symposium on Biocomputing
1 December 2002

We have adapted information content based measures for use with the Gene Ontology, and examine various properties of GO. Expand

TAMBIS--Transparent Access to Multiple Bioinformatics Information Sources.

P. Baker, A. Brass, S. Bechhofer, C. Goble, N. Paton, R. Stevens
Medicine, Computer Science
Proceedings. International Conference on…
1 January 1998

The TAMBIS project aims to provide transparent access to disparate biological databases and analysis tools, enabling users to utilize a wide range of resources with the minimum of effort. Expand

Making sense of microarray data distributions

D. Hoyle, M. Rattray, R. Jupp, A. Brass
Biology, Computer Science
Bioinform.
1 April 2002

MOTIVATION Typical analysis of microarray data has focused on spot by spot comparisons within a single organism. Expand

Transparent access to multiple bioinformatics information sources

C. Goble, R. Stevens, +5 authors A. Brass
Computer Science
IBM Syst. J.
1 February 2001

This paper describes the Transparent Access to Multiple Bioinformatics Information Sources project, known as TAMBIS, in which a domain ontology for molecular biology and bioinformatrics is used in a retrieval-based information integration system for biologists. Expand

TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources

P. Baker, A. Brass, S. Bechhofer, C. Goble, N. Paton, R. Stevens
Computer Science, Medicine
ISMB
1 July 1998

UNLABELLED TAMBIS (Transparent Access to Multiple Bioinformatics Information Sources) is an application that allows biologists to ask rich and complex questions over a range of bioinformatic resources. Expand

PEDRo: A database for storing, searching and disseminating experimental proteomics data

K. Garwood, T. Mclaughlin, +22 authors N. Paton
Biology, Medicine
BMC Genomics
17 September 2004

BackgroundProteomics is rapidly evolving into a high-throughput technology, in which substantial and systematic studies are conducted on samples from a wide range of physiological, developmental, or… Expand

A systematic approach to modeling, capturing, and disseminating proteomics experimental data

C. Taylor, N. Paton, +22 authors S. Oliver
Computer Science, Medicine
Nature Biotechnology
1 March 2003

We present a UML (unified modeling language) approach to proteomics experimental data, describe XML and SQL (structured query language) implementations of that model, and discuss capture, storage, and dissemination strategies. Expand

Vulnerability versus resilience to prenatal stress in male and female rats; Implications from gene expression profiles in the hippocampus and frontal cortex

D. V. D. Hove, G. Kenis, +7 authors J. Prickaerts
Biology, Medicine
European Neuropsychopharmacology
1 October 2013

Adverse life events during pregnancy may impact upon the developing fetus, predisposing prenatally stressed offspring to the development of psychopathology. In the present study, we examined the… Expand

Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection

H. Noyes, A. Brass, +20 authors S. Kemp
Biology, Medicine
Proceedings of the National Academy of Sciences
18 May 2011

African bovine trypanosomiasis caused by Trypanosoma sp., is a major constraint on cattle productivity in sub-Saharan Africa. Some African Bos taurus breeds are highly tolerant of infection, but the… Expand

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