A. Brass

Publications
Influence

Investigating Semantic Similarity Measures Across the Gene Ontology: The Relationship Between Sequence and Annotation

P. Lord, R. Stevens, A. Brass, C. Goble
Computer Science, Medicine
Bioinform.
1 July 2003

MOTIVATION Many bioinformatics data resources not only hold data in the form of sequences, but also as annotation. In the majority of cases, annotation is written as scientific natural language: this… Expand

TAMBIS--Transparent Access to Multiple Bioinformatics Information Sources.

P. Baker, A. Brass, S. Bechhofer, C. Goble, N. Paton, R. Stevens
Medicine, Computer Science
Proceedings. International Conference on…
1 January 1998

The TAMBIS project aims to provide transparent access to disparate biological databases and analysis tools, enabling users to utilize a wide range of resources with the minimum of effort. A prototype… Expand

P. Lord, R. Stevens, A. Brass, C. Goble
Medicine, Computer Science
Pacific Symposium on Biocomputing
1 December 2002

Many bioinformatics resources hold data in the form of sequences. Often this sequence data is associated with a large amount of annotation. In many cases this data has been hard to model, and has… Expand

Making sense of microarray data distributions

D. Hoyle, M. Rattray, R. Jupp, A. Brass
Computer Science, Medicine
Bioinform.
1 April 2002

MOTIVATION Typical analysis of microarray data has focused on spot by spot comparisons within a single organism. Less analysis has been done on the comparison of the entire distribution of spot… Expand

Transparent access to multiple bioinformatics information sources

C. Goble, R. Stevens, +5 authors A. Brass
Computer Science
IBM Syst. J.
1 February 2001

This paper describes the Transparent Access to Multiple Bioinformatics Information Sources project, known as TAMBIS, in which a domain ontology for molecular biology and bioinformatics is used in a… Expand

TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources

P. Baker, A. Brass, S. Bechhofer, C. Goble, N. Paton, R. Stevens
Medicine, Computer Science
ISMB
1 July 1998

UNLABELLED TAMBIS (Transparent Access to Multiple Bioinformatics Information Sources) is an application that allows biologists to ask rich and complex questions over a range of bioinformatics… Expand

PEDRo: A database for storing, searching and disseminating experimental proteomics data

K. Garwood, T. Mclaughlin, +22 authors N. Paton
Medicine, Biology
BMC Genomics
17 September 2004

BackgroundProteomics is rapidly evolving into a high-throughput technology, in which substantial and systematic studies are conducted on samples from a wide range of physiological, developmental, or… Expand

A systematic approach to modeling, capturing, and disseminating proteomics experimental data

C. Taylor, N. Paton, +22 authors S. Oliver
Biology, Medicine
Nature Biotechnology
1 March 2003

Both the generation and the analysis of proteome data are becoming increasingly widespread, and the field of proteomics is moving incrementally toward high-throughput approaches. Techniques are also… Expand

Vulnerability versus resilience to prenatal stress in male and female rats; Implications from gene expression profiles in the hippocampus and frontal cortex

D. V. D. Hove, G. Kenis, +7 authors J. Prickaerts
Biology, Medicine
European Neuropsychopharmacology
1 October 2013

Adverse life events during pregnancy may impact upon the developing fetus, predisposing prenatally stressed offspring to the development of psychopathology. In the present study, we examined the… Expand

Query processing in the TAMBIS bioinformatics source integration system

N. Paton, R. Stevens, P. Baker, C. Goble, S. Bechhofer, A. Brass
Computer Science
Proceedings. Eleventh International Conference on…
28 July 1999

Conducting bioinformatic analyses involves biologists in expressing requests over a range of highly heterogeneous information sources and software tools. Such activities are laborious, and require… Expand

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