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We show that a rate of conditional Shannon entropy reduction, characterizing the learning of an internal process about an external process, is bounded by the thermodynamic entropy production. This approach allows for the definition of an informational efficiency that can be used to study cellular information processing. We analyze three models of increasing… (More)

- David Hartich, Andre C Barato, Udo Seifert
- Physical review. E
- 2016

For a general sensory system following an external stochastic signal, we introduce the sensory capacity. This quantity characterizes the performance of a sensor: sensory capacity is maximal if the instantaneous state of the sensor has as much information about a signal as the whole time series of the sensor. We show that adding a memory to the sensor… (More)

- Andre C Barato, Udo Seifert
- Physical review letters
- 2015

Biomolecular systems like molecular motors or pumps, transcription and translation machinery, and other enzymatic reactions, can be described as Markov processes on a suitable network. We show quite generally that, in a steady state, the dispersion of observables, like the number of consumed or produced molecules or the number of steps of a motor, is… (More)

For a paradigmatic model of chemotaxis, we analyze the effect how a nonzero affinity driving receptors out of equilibrium affects sensitivity. This affinity arises whenever changes in receptor activity involve ATP hydrolysis. The sensitivity integrated over a ligand concentration range is shown to be enhanced by the affinity, providing a measure of how much… (More)

- Andre C Barato, Udo Seifert
- The journal of physical chemistry. B
- 2015

The Fano factor, an observable quantifying fluctuations of product generation by a single enzyme, can reveal information about the underlying reaction scheme. A lower bound on this Fano factor that depends on the thermodynamic affinity driving the transformation from substrate to product constrains the number of intermediate states of an enzymatic cycle. So… (More)

- A. C. Barato, U. Seifert
- Physical review. E, Statistical, nonlinear, and…
- 2013

For sensory networks, we determine the rate with which they acquire information about the changing external conditions. Comparing this rate with the thermodynamic entropy production that quantifies the cost of maintaining the network, we find that there is no universal bound restricting the rate of obtaining information to be less than this thermodynamic… (More)

- Andre C Barato, Udo Seifert
- Physical review letters
- 2015

We obtain lower and upper bounds on the skewness and kurtosis associated with the cycle completion time of unicyclic enzymatic reaction schemes. Analogous to a well-known lower bound on the randomness parameter, the lower bounds on skewness and kurtosis are related to the number of intermediate states in the underlying chemical reaction network. Our results… (More)

The thermodynamic uncertainty relation provides an inequality relating any mean current, the associated dispersion and the entropy production rate for arbitrary non-equilibrium steady states. Applying it here to a general model of a molecular motor running against an external force or torque, we show that the thermodynamic efficiency of such motors is… (More)

- A C Barato, Juan A Bonachela, C E Fiore, H Hinrichsen, Miguel A Muñoz
- Physical review. E, Statistical, nonlinear, and…
- 2009

We study in further detail particle models displaying a boundary-induced absorbing state phase transition [Deloubrière and van Wijland Phys. Rev. E 65, 046104 (2002) and Barato and Hinrichsen, Phys. Rev. Lett. 100, 165701 (2008)]. These are one-dimensional systems consisting of a single site (the boundary) where creation and annihilation of particles occur,… (More)

When a nonequilibrium growing interface in the presence of a wall is considered a nonequi-librium wetting transition may take place. This transition can be studied trough Langevin equations or discrete growth models. In the first case, the Kardar-Parisi-Zhang equation, which defines a very robust universality class for nonequilibrium moving interfaces, with… (More)